Robert Gates: Obama's National Security Shakeup At Least A Year In The Making

military and intelligen
ce agencies historically haven't gotten along well, especially the DOD and CIA. they've often looked down on each other, and this mistrust led the DOD to create its own intelligence agenices in and out of the services.
(NOTE: the same kind of disconnect tends to be visible in Pakistan, as well. Musharraf was of the military, and tried to clean out the ISI, by some accounts. he was unable to; it's doubtful his successor will. perhaps the ISI learned too well from the CIA while supporting the Afghan mujahadeen against the Soviets.)
Obama's choice to appoint department heads from different backgrounds is a hopeful sign to me, in that each may walk in the shoes of the other, and perhaps lessen the animosity and stovepiping that's been history for so many years. it resembles the military concept of cross-training, in which members of one service are required to serve temporarily in another branch before further advancement. it enables the person to experience the benefits and problems the other faces.
About Barack Obama
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